Shawn Burgess
@burgesslab
zebrafish researcher, genetics and genomics of regeneration All posts are my personal opinions and do not reflect the position of the NIH or US government
#zebrafish genome update. UCSC has added both GRCz12tu and GRCz12ab to the zebrafish pulldown menu making it much easier to find the new assemblies!
And a final track that shows all variants identified from sequencing multiple fish from our TU/AB hybrid fish NHGRI-1 which will show common SNV in both strains:
One track that shows conservation between zebrafish, common carp, grass carp, and goldfish (good for identifying conserved, non-coding regions):
3 tracks that predict spCas9 CRISPR target sites (all possible sites, sgRNAs that can be made with T7 (start with GG), or SP6 sgRNAs (start with GA)):
#zebrafish genome update: So for those of you waiting for RefSeq annotations to hit the GRCz12ab genome, UCSC has generated annotations via BLAST based on the RefSeq RNA's generated for TU.
FYI, you can make all those annoying Gemini icons in chrome vanish by turning them off in settings:
Took willow (and the family) to the Nats game tonight for Pups in the Parrk night.
You can permanently disable AI search by putting this in your search engine options and making it the default.
C’mon man. The scientific does not “center on two primary hypotheses.”
Special shoutout to Wei Qin from @varshneylab.bsky.social lab. He has done the hard work to make precise editing in zebrafish a snap! Also shout out to all the other speakers in the series!
Everything is crap so I am visualizing my competence is equal to dog walkers in Buenos Aires:
Season 3 of School Spirits started yesterday. This is the best season yet and I am not biased in any way: