napari

@napari

I am an n-dimensional image viewer for Python 🌉 bridged from ⁂ follow @ap.brid.gy to interact

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napari@napari· 6h

Sizzling Summer Series 3 - naPLari Hackathon, Kraków 🇵🇱 A lucky crew of 13 got to spend 6 jam-packed sunny days inside pumping out a fantastical assortment of napari features 🖥️ It was a ☕️ caffeine-, string 🧀 cheese- and 🥟 pierogi-fuelled extravaganza 🎊

napari@napari· 1d

Sizzling Summer Series 2: Minneapolis -> Kraków ✈️ We talked, tutorialed and sprinted at EuroPython! The sprints WENT OFF -- 22 merged PRs don't lie 🤯 Then rinse repeat for EuroSciPy - our first conference as platinum sponsors! 💐THANK YOU💐 to those who joined us in Kraków!

napari@napari· 2d

The past month has been a whirlwind for napari 🌪️ Join us for a Sizzling Summer Series of posts highlighting the napari community's amazing work💪 First, Tim Monko, @aganders3 and @willingc took on Minneapolis for SciPy 2026 with a tutorial, talk and tools […] [Original post on fosstodon.org]

napari@napari· 13d

RE: https://fosstodon.org/@napari/116616504781003295 And it's a wrap! The hackathon was a fantastic success! 🥳 You can look forward to a longer post about all we did, and one of our biggest releases yet in 0.9.0! Huge thanks to all the participants 🤩, and we hope to see you at the next one!

Hackathon participants discussing a new feature demo.

Jules Vanaret shows off slicing of volumes with non-orthogonal transforms.

The naPLari hackathon crowd: Wouter-Michiel Vierdag, Grzegorz Bokota, Tim Monko, Giannis Liaskas, Draga Doncila Pop, Lorenzo Gaifas, Aroj Hada, Brian Northan, Jules Vanaret, Zuzana Čočková, Curtis Rueden, Juan Nunez-Iglesias, and Margot Chazotte.

Celebratory drink after the last full day of the hackathon. 🍻

napari@napari· Jul 12

Speaking of annotation: if you've switched back and forth between annotating in 2D and checking your work in 3D, you know it can be disorienting! You can now sync the 2D and 3D cameras so that panning, zooming, and scrubbing around in 2D affects 3D view, and vice versa. Let us know if it helps you!

napari@napari· Jul 12

Annotating blobs just got easier with auto-fill of labels when right-clicking! Right click, draw your shape, and the whole shape gets auto-filled. This should give much faster annotations for many workflows!

napari@napari· Jul 12

*Finally*, napari gets a built-in histogram! It's still a work in progress but already *very* cool if we do say so ourselves, with live update based on the canvas and progressive, background update when computing on large full data.

napari@napari· Dec 24

Has napari helped your research this year? Why not say thank you to free and open source software by making a small donation? Every bit helps your friendly core team fix bugs and bring new features to life! CZI will match up to $75K in donations! […] [Original post on fosstodon.org]

napari@napari· Dec 18

We're a bit late in ringing in the giving season, but it is indeed upon us. Enjoy our special edition holiday logo ☃️ and, if you can spare a bit and appreciate napari, please donate to our development efforts! 🙏 CZI will match donations up to $75K. https://opencollective.com/napari/donate

napari@napari· Oct 31

Happy Halloween from the napari team!

napari@napari· Oct 2

napari 0.6.5 is out! 🚀 Rapid-fire highlights are: colorbar overlay, custom startup script, and better and prettier documentation! Check out the full release notes here: https://napari.org/dev/release/release_0_6_5.html

Image depicting the napari viewer in grid mode with scale bars and color bars enabled

napari@napari· May 28

Ok guys **nobody open any more issues** 😂

A cropped screenshot of the napari github repo. The issues tab shows 999 open issues.

napari@napari· May 6

Wait, wait, wait....v0.6.0 is just out, but there is already a next big feature coming to napari? Yes! You see it right 😊 (more impressive demo coming soon) . Our own @brisvag has been doing work on multichannel grid mode which is to replace our current grid […] [Original post on fosstodon.org]

napari@napari· May 1

As a final treat, here's a nice video of napari panning and zooming around a gorgeous 88Mp image from NSF's optical astronomy NOIRLab (data source: https://noirlab.edu/public/images/noirlab2501a/).

napari@napari· May 1

@czaki has made huge improvements to the Shapes layer, supported by a CZI grant to the Spatial Data team. We've launched a *fast* triangulation library written in Rust (called bermuda 😉), making Shapes up to 200x faster! Read more: https://napari.org/stable/guides/triangulation.html

Matplotlib figure showing how different tools result in different triangulations for the same shape

napari@napari· May 1

Axis praxis! You can now point the depth, vertical, and horizontal axes any which way! We've fixed the handedness of the 3D view — DNA helices are again right-handed 😅, and if you have map data you can make latitude point north. Check out our new guide! […] [Original post on fosstodon.org]

Screenshot of the napari viewer showing a dataset of air temperature over North America overlaid on worldwide sea surface temperatures. The axes are drawn at coordinate (0, 0) with latitude pointing up and longitude pointing right.

Screenshot of the napari viewer showing a right-handed DNA helix as a surface layer

napari@napari· May 1

0.6.0 features Hanjin Liu’s command palette. It exposes all commands registered with the napari app-model (https://app-model.readthedocs.io/en/latest/) — including plugin commands! We now go to an exciting new phase for napari plugins — see discussion at […] [Original post on fosstodon.org]

napari@napari· May 1

And it's finally here! napari 0.6.0 is out on PyPI and conda-forge! 🥳 We've had a few threads about this release already but let's recap with some highlights: 🧵

napari@napari· Apr 23

BIG change since 0.6.0a1, the culmination of months of work: we've made major improvements to triangulation (splitting polygons into triangles for drawing on the GPU), resulting in up to 200x while improving accuracy. We can now accurately draw South Africa with its enclave Lesotho.

the napari viewer showing the outline of South Africa as a Shapes layer

napari@napari· Apr 23

napari 0.6.0rc0 is out! Barring any crazy bugs 🐛, 🙏 napari 0.6.0 should be out next week, Apr 30.

napari@napari· Apr 15

Hello all, Hopefully the last community meeting now before 0.6.0 lands 😅 This has been a lot of hard work the last weeks by multiple people! Want to discuss the release or have any napari questions for core devs or want to show a cool demo? Come join tomorrow! […] [Original post on fosstodon.org]

napari@napari· Apr 11

Did you notice that cool new camera parameters menu? That and other right-click menus are easier to discover thanks to new core dev (!) Tim Monko — check the little indicators! *And*, check the cute new canvas dimensionality toggle! And did you notice view angle is preserved now? 😉😍

napari@napari· Apr 11

What do structural biologists and atmospheric scientists have in common? They care which way their axes point! In napari 0.6.0, we finally default to a right-handed reference frame in 3D. But don't panic, we also let you customise axes directions from the API, UI, or startup preferences!

screenshot of the napari viewer showing an atmospheric temperature time series overlaid on a sea surface temperature time series. The axes indicators are visible and show latitude pointing up and longitude pointing right.

Screenshot of the napari viewer displaying the structure of B-DNA. The helix is right-handed, correctly, and the axes form a right-handed reference frame. There is also a panel that can be used to change the direction of axes.

Structure reference: https://www.rcsb.org/structure/1BNA

napari@napari· Apr 11

Thanks to Hanjin Liu, napari now has a command palette! 🎨 This thing is really nice to use — the core team can no longer live without it — and it even works with plugin commands! 🤩

napari@napari· Mar 31

Another community contribution! Taking screenshots of regions of interest has been made a lot easier with help of our community member Sesan Ajina! Here, a code example: napari.org/dev/gallery/... Soon, more on how we are making publication ready figures easier with help of our community members!

napari@napari· Mar 25

Hello all, We are now very close to landing 0.6.0. Here is your last chance to give feedback and report your issues at the community meeting at 8:30am SFO / 11:30am DC / ⚠️ 3:30pm London / 4:30pm Paris ⚠️ . Agenda: https://hackmd.io/BXWDZ3i8Q6OAEASrkaSNIQ […] [Original post on fosstodon.org]

napari@napari· Mar 20

Gearing up for our 0.6.0 release now we have the alpha release out, it is time to look back on some of the awesome features implemented by contributors of the community since 0.5.0. First off an awesome contribution) by GitHub user beanli161514 to enable 3D […] [Original post on fosstodon.org]

napari@napari· Mar 12

Please hold while we ready the 0.6.0 release… 😅 In the meantime, though, come to our latest Atlantic community meeting and hear all about it! 8:30am SFO / 11:30am DC / ⚠️ 3:30pm London / 4:30pm Paris ⚠️ (note the altered Europe times due to the DST […] [Original post on fosstodon.org]