Olivier Borkowski
@oborkowski
Tenured Scientist in Synthetic Biology (INRAE, Paris Area, France) #CellFree ⦁ #SynBio ⦁ #Bioengineering ⦁ #Microbiology
Regulation of Escherichia coli fermentation processes: from molecular mechanisms to smart industrial practice doi.org/10.1007/s002...
Gene circuit-driven amplified selection enables evolution of fast-growing Escherichia coli doi.org/10.64898/202...
Cell-free pathway prototyping enables cost-effective biomanufacturing of 1,2,4-butanetriol at the 1-L scale doi.org/10.64898/202...
Olivier Borkowski Modelling host biosynthetic limitations and dynamics for engineering cell factories doi.org/10.1080/2993...
Engineered E. coli swarming for binary and analog input recording doi.org/10.1038/s443...
Engineering biology-enabled sensors for environmental monitoring doi.org/10.1016/j.co...
The Essential Role Of Ribosomal Feedback In Bacterial Cell Growth And Metabolic Load -- A Systems Biology Approach For Unveiling Shared Resources Regulation Within Synthetic Genetic Circuits arxiv.org/abs/2606.14835
Paradoxical gene regulation explained by competition for genomic sites doi.org/10.1101/2025...
Structural adaptations for enhanced translation kinetics in evolved ribosomes doi.org/10.64898/202...
A Low-Cost, High-Throughput Design-Build-Test Pipeline for Engineering Genetic Systems: Stress Testing with Complex Structural Proteins doi.org/10.64898/202...
Genome-guided generative adversarial learning enables nanopore adaptive sequencing doi.org/10.1038/s414...
Bioluminescent sentinel plants enable autonomous diagnostics of viral infections doi.org/10.1038/s414...
Reconstructing heterogeneous metabolic trajectories of E. coli diauxie via a dynamical Maximum Entropy Principle doi.org/10.64898/202...
Toward molecular classification architectures for cell-free diagnostics doi.org/10.1016/j.co...
Chemically tunable permeability of engineered alpha-Hemolysin in synthetic cells doi.org/10.64898/202...
Wow Transplanting light-dependent reactions for mammalian eye photosynthesis doi.org/10.1016/j.ce...
Coarse-graining metabolic networks via feature learning reveals cross-species growth laws doi.org/10.64898/202...
Geometric ordering in bacterial communities doi.org/10.1073/pnas...
Burden-aware feedback control of microbial consortia doi.org/10.1038/s414...
Breathing both ways: simultaneous aerobic–anaerobic respiration in microbes doi.org/10.1016/j.ti...
From known knowns to unknown unknowns: synthetic biology paths to antimicrobial discovery doi.org/10.1016/j.mi...
Opportunities for artificial intelligence and synthetic biology in designing living drug delivery systems doi.org/10.1016/j.ad...
Generative design of sequence specific DNA binding proteins doi.org/10.64898/202...
Growth costs of suboptimal protein allocation in nonlinear models of growing cells doi.org/10.64898/202...
Fast approximate loss change for active learning on imbalanced data doi.org/10.1016/j.as...
Artificial cell-free pathway for carbon-efficient glycerol-HCO3− conversion to l-aspartate with ATP and cofactor trade-offs doi.org/10.1016/j.bi...
Engineered Vibrio natriegens lysate can replace multiple components of cell culture media doi.org/10.64898/202...
De novo-designed ribozyme-controlled riboregulator for cell-free diagnostics share.google/xeD1QF1U5Oo4...
Physics-constrained neural ordinary differential equation models to discover and predict microbial community dynamics doi.org/10.1073/pnas...