in silico Plants

@insilicoplants

in silico Plants is an open-access journal dealing with all aspects of computational plant science. academic.oup.com/insilicoplants

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in silico Plants@insilicoplants· 8d

📢 The #AGU26 session B031: Crop Modeling, Data Assimilation, and Machine Learning for Agricultural Decision Support is now accepting submissions Abstract Submission Deadline: 5 August 2026 Submission link: buff.ly/d6e96t2 #PlantScience

in silico Plants@insilicoplants· 14d

PhD Position investigating the impacts of agricultural diversification on crop yield, soil health, and soil biogeochemical cycling, using a systems modeling approach and AI at Virginia Tech Application Deadline: September 1, 2026 #PlantSciJobs

Qualifications:
§ Experience with process-based ecosystem or crop models (e.g., APSIM, DSSAT, DNDC).
§ Proficiency in at least one programming language (e.g., Python, R, MATLAB, C++).
§ Experience working with large geospatial datasets.
§ Master’s degree in a relevant field (e.g., agroecology, soil science, agronomy, hydrology, remote
sensing, or a related discipline).
§ Experience in AI, high-performance computing, or data assimilation is preferred.
Application Deadline: September 1, 2026
Application process:
Interested candidates are strongly encouraged to contact Dr. Yongfa You (yongfayou@vt.edu) before
submitting their application. Please include the following documents in the email: 1) a brief description of
research experience, expertise, and interests; 2) curriculum vitae; 3) academic transcripts; 4) contact
information of three references.

in silico Plants@insilicoplants· 18d

👋 Attending #ICPR2026? Connect with our EiC, Editors, & Editorial Advisory Board members while you’re there! Find them at the following sessions or on the floor👇

Promotional tile inviting readers to connect with in silico Plants at the International Conference on Photosynthesis Research, 26–30 July, flanked by conference and journal logos and six researcher headshots. They are: Yu Wang, Florian Busch, Christine Raines, Tsu-Wei Chen, Silvere Vialet-Chambrand and Xinguang Zhu.

in silico Plants@insilicoplants· 20d

Attending #ICPR2026? Connect with our EiC, Editors, & Board members at • "Stomata, the gatekeepers of photosynthesis" • "Engineering Photosynthesis" • "Light, Carbon, Code: Advances in Modeling Photosynthesis" on the floor or DM @tsuweichen.bsky.social and @florianabusch.bsky.social.

in silico Plants@insilicoplants· 23d

🌟Welcome new isP Editor Andrea Schnepf!🌟 Prof. Schnepf is the Head of the Soil-, Root Systems and Rhizosphere Processes research group at @agrosphere-ibg-3.bsky.social. Her research focuses on plant-soil interactions. #PlantScience #SoilScience

in silico Plants@insilicoplants· Jul 13

💻 Impact of root development, soil texture and length of the root hair zone on root water uptake by Florian Stoll, Jan Vanderborght, Patrick Duddek, Félicien Meunier @adrienheymans.bsky.social Mutez Ahmed, and Andrea Carminati buff.ly/9WuWJB7 #PlantScience #RootScience

in silico Plants@insilicoplants· Jul 8

🧬 Changes in the leaf area-seed yield relationship in soybean driven by genetic, management and environments: implications for high-throughput phenotyping by Mariana Chiozza, Kyle Parmley, William Schapaugh, Antonio Asebedo, Asheesh Singh, Fernando Miguez buff.ly/jL4sPwv #PlantScience #phenotyping

in silico Plants@insilicoplants· Jul 7

🍅 A FSP model of dwarf #tomato specifically designed for vertical farming systems by Michele Butturini, Katarína Smoleňová, Jacopo Restina, Jacob Stolz, Jorad de Vries and Leo Marcelis doi.org/10.1093/insi... #FSPM #PlantScience #horticulture @wurplant.bsky.social

in silico Plants@insilicoplants· Jul 1

💻 🍃 #model-based inference of a dual role for HOPS in regulating guard cell vacuole fusion buff.ly/y90nDVH #PlantScience

in silico Plants@insilicoplants· Jun 29

🌿Are you teaching or learning plant modeling? Discover our latest article type: Methods for Plant Modeling articles describe software, tools, models, and other resources in an accessible way, making them suitable for educational use. 📰 See the collection at buff.ly/P1GV8q6

Learn how to use plant models!
Methods for Plant Modelling
Every article contains an introduction to the model, essential equations, and instructions
EXPLORE THE COLLECTION! - in silico plants

in silico Plants@insilicoplants· Jun 24

We’re excited to share that isP’s Impact Factor climbed from 2.4 to 3.3 this year! A huge thanks to our authors, readers, reviewers, and editors for making this possible!

in silico Plants@insilicoplants· Jun 22

Check out the @botany.one blog from the Annals of Botany Company. This site offers engaging updates for plant scientists and enthusiasts, featuring captivating and current plant-related news from diverse sources. Discover more at botany.one. #Botany #PlantScience

in silico Plants@insilicoplants· Jun 15

Is your work accessible to everyone? 🌿💻 Submit a Methods for Plant Modelling article to assist non-modelling researchers and students use and build upon your ✅ Algorithms & software ✅ Models ✅ Frameworks, platforms, or languages Click here for more information: academic.oup.com/insilicoplan...

Bridge the gap in plant science. Make your work accessible with our newest article type: Methods for Plant Modelling. Submit your work today! - in silico Plants

in silico Plants@insilicoplants· May 20

NEW! 🧬🍃 Can Deep Learning Predict Inducibility of Stress-Responsive Gene Expression from DNA Sequence in Arabidopsis thaliana? by Jordi Alonso Esteve @nielsaerts.bsky.social @svanwees.bsky.social Dick de Ridder and Aalt D J van Dijk buff.ly/2OuGshk #PlantScience #genetics @utrechtpmi.bsky.social

in silico Plants@insilicoplants· May 18

Masters level Graduate Research Assistantship with the Precision Irrigation Management (PRIMA) Laboratory of the University of Nevada, Reno #PlantSciJobs

M.Sc. Graduate Research Assistantship
The Precision Irrigation Management (PRIMA) Laboratory of the University of Nevada, Reno (UNR) invites applicants for a M.Sc. graduate research assistantship. The selected applicant will conduct research regarding the optimal use of water for the irrigation of crops in arid and semiarid areas.
Expected start date: Fall 2026.
Interested applicants can submit their resume to Dr. Alejandro Andrade-Rodriguez –
andradea@unr.edu.

in silico Plants@insilicoplants· May 12

Advances and opportunities for computational interrogation of plant proteins by Sarah M. Bohling, Shaila Musharoff, and Laura H. Gunn buff.ly/DoV49D5 via @theplantjournal.bsky.social #PlantScience

in silico Plants@insilicoplants· May 11

Metabolic modeling links leaf anatomy to environment-specific benefits on the C3-C4 spectrum by Tiago M. Machado, Alejandro León-Ramírez, Sezin Dogan, Andreas P.M. Weber, Urte Schlüter, and Nadine Töpfer buff.ly/DadgXje via @biorxiv-plants.bsky.social #PlantScience #Photosynthesis

in silico Plants@insilicoplants· Apr 22

🌾 A functional-structural plant #model for climbing bean: simulating light capture in #maize/bean polycultures by Rik J. L. Rutjens, Jochem B. Evers, Leah R. Band, Matthew D. Jones, Markus R. Owen buff.ly/ETl5O9Y #PlantScience #FSPM

in silico Plants@insilicoplants· Apr 20

🌿 PlantBiophysics.jl: a high-performance, modular software for prototyping and scaling biophysical #models from leaf to canopy by @rvezy.bsky.social Simon Treillou, Samuel Mackeown, Emilie Peynaud, Raphael P. A. Perez, Thomas Arsouze, Jean Dauzat buff.ly/6rpYkym #PlantScience

in silico Plants@insilicoplants· Apr 17

in silico Plants@insilicoplants· Apr 16

🍃 The Virtual Plant Laboratory: a modern plant #modelling framework in Julia by Alejandro Morales, David B. Kottelenberg, Ana Ernst, Remi Vezy, Jochem B. Evers buff.ly/qvooTCU #PlantScience

in silico Plants@insilicoplants· Apr 15

🍃 Modelling leaf metabolism using a charge- and proton-balanced diel flux balance analysis #model by Velayudhan Vipina, Sanu Shameer buff.ly/nKWi3x9 #PlantScience

in silico Plants@insilicoplants· Apr 13

Follow us on LinkedIn at buff.ly/15wPKWb for article alerts, research highlights, event updates, career opportunities, and to connect with the plant biology community.

in silico Plants@insilicoplants· Apr 9

💻 🍃 Virtual world coupling with #photosynthesis evaluation for synthetic data production by @dhelmrich.bsky.social Mona Giraud, Jens Henrik Gobbert, Hanno Scharr, Morris Riedel, Ebba Pora Hvannberg, Andrea Schnepf @agrosphere-ibg-3.bsky.social buff.ly/ncZrjvV #PlantScience #CPlantBox

in silico Plants@insilicoplants· Apr 7

Dynamic parameterization of the nutrient resorption process in forest ecosystems with a hybrid model buff.ly/Y9o1njx via @forestecosyst.bsky.social #PlantScience

in silico Plants@insilicoplants· Apr 7

🌡️ Review: Predicting plant thermal responses using a temperature-aware plant metabolic #model: a primer by Philipp Wendering and Zoran Nikoloski buff.ly/6SVkXf3 #PlantScience

in silico Plants@insilicoplants· Apr 6

🌾 A robust #model based on root morphological and anatomical features to distinguish high and low methane emission rice varieties through machine learning approaches buff.ly/CYrlQal #PlantScience #RootScience

in silico Plants@insilicoplants· Apr 3

🌿 Simulated evolution of phenotypic plasticity in a functional-structural plant root #model by Michael Renton, Hugo Salinas, Pieter Poot buff.ly/7Z5faUb #PlantScience #FSPM #phenotyping #RootScience

in silico Plants@insilicoplants· Apr 2

🌳 Complete workflow for detailed 3D forest reconstruction: from terrestrial laser scanning to complex 3D radiative transfer #modelling by Tomas Hanousek, Jan Novotny, Barbora Navratilova, Marian Svik, Jan Krejza, Ruzena Janoutova buff.ly/HJ3EwMh #PlantScience

in silico Plants@insilicoplants· Mar 20

🍃 Integrated Modeling Approaches for Agricultural Digital Twins: The Role of PBM, ABM, ML, and Model Coupling buff.ly/M2ESg0H #PlantScience #model